Research Tools

Main content

FlattifY

Tool to correct for vignetting effects in microscopy images. The algorithm and implementation in MATLABÔ (The Mathworks) have been published in RSC Advances

The code can be downloaded here.

YeastQuant

Image processing platform for the quantitative analysis of microscopy time lapse movies

YQimg  
Yeast Quant

YeastQuant has been published in Integrative Biology

The Matlab code and Filemaker database can be downloaded here.
The raw data and the result of the analysis presented in the manuscript are also made available as a training dataset. Please contact the authors if you would like to obtain these files.

YeastQuant is developed further by the Pelet lab.

GoldenEye

Analysis tool to quantify colony sizes in synthetic genetic analysis screens.
This program provides a intuitive GUI to analyze and compare different growth phenotypes in SGA screens.

GoldenEye Image  
GoldenEye Image

The code is available here along with a documentation and a small test dataset.

Matlab Code

Documentation

Dataset

 
 
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Thu Apr 27 14:56:55 CEST 2017
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