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Institute of Biochemistry - Welcome

Upcoming Seminars

Monday, May 21st, 2012
Dr. Andrea Pichler, "SUMO and ubiquitin control by E2 enzymes"
Friday, June 8th, 2012
Yamuna Krishna
, "Molecular DNA devices map endosomal maturation in live cells"
Claus
Claus M. Azzalin

Azzalin Group

The physical ends of linear eukaryotic chromosomes chemically resemble the ends of DNA double stranded breaks. Yet, they do not trigger a DNA damage response because they are ‘capped’ by specialized ribonucleoprotein structures named telomeres. Telomeres comprise repetitive DNA sequences, protein complexes and ‘telomeric repeat-containing RNA’ (TERRA) molecules. When telomere integrity is compromised, a severe DNA damage response is evoked at chromosome ends, triggering apoptosis or cellular senescence, and in some instances chromosomal rearrangements. Our laboratory studies how TERRA contributes to maintaining the structure and function of telomeres. Because of the intimate connection between telomere maintenance, cancer and cellular senescence, our research should contribute to the current knowledge of cancer and senescence etiology, and open the way to the identification of new drug targets for treating cancer and age-associated diseases. More...

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Yves
Yves Barral

Barral Group

We use the budding yeast Saccharomyces cerevisiae as our main model to study how asymmetric cell division contributes to the generation of cell diversity in eukaryotes. We follow three axes of research. First, we investigate how the mitotic spindle senses and orients along the polarity axis of the cell to reproducibly segregate its oldest centrosome to the bud. Second, we investigate the role of diffusion barriers in the coordination of cell polarity with the plane of division, and in the asymmetric segregation of fate determinants between mother and bud. Third, we are particularly interested in understanding the nature and segregation of age determinants. This leads us to investigate the intriguing possibility that part of the aging process may consist in the accumulation of memory traces by the yeast mother cell. More...

Barral_Research
Ari
Ari Helenius

Helenius Group

Our group studies interactions that occur between animal viruses and their host cells during the early infectious cycle; how virus particles bind to cells, how they are internalized by endocytosis, how they are transported to various organelles such as endosomes and the endoplasmic reticulum, how they penetrate into the cytosol, and how the genome is uncoated. Since viruses take advantage of host cell factors and processes during their entry, we combine virological techniques with cell biological approaches, molecular biology, advanced imaging, and systems biology. The virus systems presently analyzed include enveloped and non-enveloped viruses; influenza virus, vaccinia virus, uukuniemi virus, semliki forest virus, human cytomegalovirus, respiratory syncytial virus, and simian virus 40. In addition, we study the dynamics of caveolae and their role in endocytosis. More...

helenius_research
Benoit
Benoît Kornmann

Kornmann Group

Cells are complex entities that contain several subcompartments, called organelles. These compartments need to exchange informations and nutrients to ensure functional coordination of the cellular activity.

The Kornmann laboratory studies the communication between these various organelles. In particular we are interested in the cross-talk between two of these: the endoplasmic reticulum and the mitochondria.

We use the powers of yeast genetics as a tool to discover important cellular players involved in connecting both organelles and we study these components using state-of-the-art biochemical methodologies. Finally, we apply the knowledge gathered in yeast to higher eukaryotes, to gain invaluable insight in the physiology of the human cell. More...

Benoit_Frontpage
Ruth
Ruth Kroschewski

Kroschewski Group

Organs are elaborate cell communities individualized from the rest of the body that assemble very reproducibly to perform specialized body functions. We study how during the development of organ-like structures each single cell acquires its specific identity. Organs originate from few founding cells and need to be maintained over the entire life of the organism. We study the possibility that asymmetric cell division would be involved in both organogenesis and organ regeneration. For these studies, we mainly use MDCK cells, a canine kidney cell line that reproducibly forms epithelial organ-like structures in vitro. We investigate the possibility that cells specialized in regards of polarization and renewal potential ensure the proper organization of the community and its long-term maintenance. More...

Kroschewski_Frontpage
Ulrike
Ulrike Kutay

Kutay Group

Research in our lab is centered on the structure, function, biogenesis and dynamics of the mammalian cell nucleus. A main focus is given to unravel the molecular mechanism of nuclear envelope breakdown at the onset of open mitosis. Second, we investigate the biogenesis of the nuclear envelope constituents such as the assembly of nuclear pore complexes and the sorting of membrane proteins to the inner nuclear membrane. Third, we characterize structure and function of LINC complexes, which connect the nuclear envelope to cytoskeletal components and serve as devices for force transmission across the nuclear boundary. And finally, as the second major topic, we seek to understand the assembly of mammalian ribosomes, giving specific emphasis to the role and crosstalk of signalling pathways that coordinate ribosome synthesis with input from external and internal cues. These questions are addressed by a combination of quantitative microscopy, RNAi screening, and biochemistry, exploiting powerful in vitro systems that we have developed. More...

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Patrick
Patrick Meraldi

Meraldi Group

Cell division relies on the faithful segregation of the duplicated chromosomes into two daughter cells during mitosis. Chromosome segregation is controlled by the mitotic spindle, which determines the orientation of cell division and exerts forces on chromosomes via kinetochores. This process is monitored by the spindle checkpoint, which ensures that cells only enter anaphase once all chromosomes are bound by microtubules and aligned on the metaphase plate. Impairment of the cell division machinery leads to aneuploidy, a hallmark of 80% of solid human tumors. Using quantitative microscopy, cell biology and biochemistry, we visualize and study how different entities, from single molecules up to the entire spindle, dynamically interact with each other in time and space, and (dis)regulate chromosome segregation both in normal and cancerous tissue culture cells. More...

meraldi_research
Vikram
Vikram Panse

Panse Group

In all living cells, the ribosome is responsible for the final step of decoding genetic information into proteins. We exploit the powerful combination of genetic, biochemical and high-throughput cell-biological approaches available in the model organism budding yeast to unravel and investigate at the molecular level “maturation steps” which funnel ribosomal subunits into translation. More...

Panse_Frontpage
Matthias
Matthias Peter

Peter Group

Regulation of cell growth and division by selective degradation mechanisms. Every living organism requires a tight coordination of cell growth and cell division, and defects in these regulatory systems are intimately linked to metabolic disorders and cellular transformation. Cell growth is manifested by an increase in cell mass, and thus involves the homeostasis and regulation of metabolic pathways, ribosome biogenesis and protein translation, and catabolic pathways including autophagy and ubiquitin-dependent degradation. Cell division requires the precise duplication of chromosomes and their partitioning between two daughter cells. The morphological transitions that lead to chromosome segregation during mitosis need to be coordinated in space and time with subsequent cytoplasm separation during cytokinesis. However, the molecular mechanisms that govern cell growth and division, and the different intra- and extracellular signals that regulate these pathways, are still poorly understood. More...

peter
Paola
Paola Picotti

Picotti Group

In our laboratory we study the molecular effects of protein aggregation in cells. A number of human diseases, including neurodegenerative diseases, are associated to the intracellular deposition of specific aggregation-prone proteins, which are critically involved in cellular dysfunction. Characterizing the generic and specific cellular responses to such proteins is of crucial importance to understanding disease pathogenesis and developing novel therapeutics. We apply a combination of new generation proteomic and phosphoproteomic approaches and fluorescence microscopy to studying the proteome-wide responses of cells to the intracellular accumulation of protein aggregates. In addition, we use targeted mass spectrometric assays, based on selected reaction monitoring (SRM) and SWATH-MS, to probe the capability of chemical and genetic modulators of reverting the toxic effects of protein aggregates. More...

PicottiLab_Research
 

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